A. Book Chapter in print progress:

1. Brotosudarmo, T.H.P.*, Limantara, L., Chandra, R.D., Heriyanto (2018) Chloroplast pigments: structure, function, assembly and characterisation. In: Chloroplast – Physiology and Genetics, Shanker, A. (Ed.), IntechOpen, ISBN 978-953-51-6025-0

B. Publication with peer review process:

1. Brotosudarmo, T.H.P.*, Heriyanto, Shioi, Y., Indriatmoko, Adhiwibawa, M.A.S., Indrawati, R., Limantara, L. (2018) Composition of the main dominant pigments from potential two edible seaweeds, Philippine Journal of Science, 147(1): 47-55

2. Juliadiningtyas, A.D., Pringgenies, D., Heriyanto, Salim, K.P., Radjasa, O.K., Shioi, Y., Limantara, L., Brotosudarmo, T.H.P.* (2018) Preliminary investigation of the carotenoid composition of Erythrobacter sp. Strain KJ5 by high-performance liquid chromatography and mass spectrometry, Philippine Journal of Science 147(1): 93-100

3. Limantara, L., Indrawati, R., Wijaya, D.E., Sulistiawati, E., Suparto, I.H., Wijayanti, R.D.E., Brotosudarmo THP (2017) Hypocholesterolemic effect and pigments composition of herbal medicine containing higher and lower plants, International Journal of Pharmacy and Pharmaceutical Sciences, 9(11): 97-103

4. Heriyanto, Juliadiningtyas, A.D, Shioi, Y., Limantara, L., Brotosudarmo, T.H.P.* (2017) Analysis of pigment composition of brown seaweeds collected from Panjang Island, Central Java, Indonesia, Philippine Journal of Science 146(3): 323-330

5. Prihastyanti, M.N.U., Heriyanto, H. and Brotosudarmo, T.H.P.* (2016) Phototostability of purple bacterial light-harvesting complexes towards exposure of light illumination traced by pigment ratio, Jurnal Teknologi, 78(4-2)

6. Indrawati, R., Chomiuk, A., Indriatmoko, Adhiwibawa, M.A.S., Siahaan, D., Brotosudarmo, T.H.P. and Limantara, L. (2015) Stability of palm carotenes in an organic solvent and in a food emulsion system, International Journal of Food Properties, 18(11), 2539-2548

7. Bujak, L., Olejnik, M., Brotosudarmo, T.H.P., Schmidt, M.K., Czechowski, N., Piatkowski, D., Aizpurua J., Cogdell, R.J., Heiss, W., Mackowski, S. (2014) Polarization control of metal-enhanced fluorescence in hybrid assemblies of photosynthetic complexes and gold nanorods, Physical Chemistry Chemical Physics, 16, 9015-9022

8. Bucynska, D., Bujak, L., Loi, M.A., Brotosudarmo, T.H.P., Cogdell, R., Mackowski, S. (2012) Energy transfer from conjugated polymer to bacterial light-harvesting complex, Applied Physics Letters 101, 173707

9. Krajnik, B., Czechowski, N., Ciszak, K., Piatkowski, D., Mackowski, S., Brotosudarmo, T.H.P., Scheer, H., Pichler, S. and Heiss, W. (2012) Plasmon-enhanced fluorescence in heterochlorophyllous peridinin-chlorophyll-protein photosynthetic complex, Optical Materials, 34(12), 2076-2079

10. Luer, L., Moulisova, V., Henry, S., Polli, D., Brotosudarmo, T.H.P., Hoseinkani, S., Brida, D., Lanzani, G., Cerullo, G. and Cogdell, R.J. (2012) Tracking energy transfer between light harvesting complex 2 and 1 in photosynthetic membranes grown under high and low illumination, Proceedings of the National Academy of Sciences USA, 109(5), 1473-1478.

11. Czechowski, N., Nyga, P., Schmidt, M.K., Brotosudarmo, T.H.P., Scheer, H., Piatkowski, D. and Mackowski, S. (2012) Absorption Enhancement in Peridinin-Chlorophyll-Protein Light-Harvesting Complexes Coupled to Semicontinuous Silver Film, Plasmonics, 7(1), 115-121.

12. Helly de Fretes, AB. Susanto, Leenawaty Limantara, Budhi Prasetyo, Heriyanto and Tatas H. P. Brotosudarmo. (2012): Estimation on degradation products of crude pigment extracts from red, brown and green varieties of red alga Kappaphycus alvaewzii (Doty) Doty: Difference absorption spectra studies, Indonesian Journal of Marine Sciences, 17 (1), 31-38

13. Bujak, L., Brotosudarmo, T.H.P., Czeckowski, N., Olejnik, M., Ciszak, K., Litvin, R., Cogdell, R.J., Heiss, W. And Mackowski, S. (2012) Spectral dependence of fluorescence enhancement in LH2-Au nanoparticle hybrid nanostructure, Acta Physica Polonica A, 122(2), 252-254

14. Brotosudarmo, T.H.P., Collins, A.M., Gall, A., Roszak, A.W., Gardiner, A.T., Blankenship, R.E. and Cogdell, R.J. (2011) The light intensity under which cells are grown controls the type of peripheral light-harvesting complexes that are assembled in a purple photosynthetic bacterium, Biochemical Journal 440, 51-61

15. Bujak, L., Czechowski, N., Piatkowski, D., Litvin, R., Mackowski, S., Brotosudarmo, T.H.P., Cogdell, R.J., Pichler, S. and Heiss, W. (2011) Fluorescence enhancement of light-harvesting complex 2 from purple bacteria coupled to spherical gold nanoparticle, Applied Physics Letters 99, 173701

16. Brotosudarmo, T.H.P. and Cogdell, R.J. (2010): Study on the structural basis of peripheral light harvesting complexes (LH2) in purple non-sulphur photosynthetic bacteria, Indonesian Journal of Chemistry, 10(3), 401-408.

17. Cogdell, R.J., Brotosudarmo, T.H.P., Gardiner, A.T., Sanchez, P.M., Cronin, L. (2010) Artificial photosynthesis – solar fuels: current status and future prospects, Biofuels, 1(6), 861-876

18. Moulisová, V., Luer, L., Hoseinkhani, S., Brotosudarmo, T.H.P., Collins, A.M., Lanzani, G., Blankenship, R.E. and Cogdell, R.J. (2009): Low light adaptation: Energy transfer processes in different types of light harvesting complexes from Rhodopseudomonas palustris, Biophysical Journal, 97, 3019-3028.

19. Brotosudarmo, T.H.P., Kunz, R., Böhm, P., Gardiner, A.T., Moulisová, V., Cogdell R.J. and Köhler, J. (2009): Single-molecule spectroscopy reveals that individual low-light LH2 complexes from Rhodopseudomonas palustris 2.1.6. have a heterogenous polypeptide composition, Biophysical Journal, 97, 1491-1500.

20. Cogdell, R.J., Gardiner, A.T., Brotosudarmo, T.H.P. and Hashimoto, H. (2008): A Comparative Look at the First Few Milliseconds of the Light Reactions of Photosynthesis, Photochemical & Photobiological Sciences, 7, 1150-1158.

21.Bujak, L., Piatkowski, D., Mackowski, S., Wörmke, S., Jung, C., Bräuchle, C., Agarwal, A., Kotov, N.A., Schulte, T., Hofmann, E., Brotosudarmo, T.H.P., Scheer, H., Govorov, A.O. and Hiller, R.G. (2009): Plasmon Enhancement of Fluorescence in Single Light-Harvesting Complexes from Amphidinium carterae, Acta Physica Polonica A, 116, S22-25.

22. Wörmke, S., Mackowski, S., Schalter, A., Brotosudarmo, T.H.P., Johanning, S., Scheer, H. and Bräuchle, C. (2008): Single Molecule Fluorescence of Native and Refolded Peridinin-Chlorophyll-Protein Complexes, Journal of Fluoresence, 18, 611-617.

23. Mackowski, S., Wörmke, S., Maier, A.J., Brotosudarmo, T.H.P., Harutyunyan, H., Hartschuh, A., Govorov, A.O., Scheer, H. and Bräuchle, C. (2008): Metal-Enhanced Fluorescence of Chlorophylls in Single Light-Harvesting Complexes, Nano Letters, 8(2), 558-646.

24. Brotosudarmo, T.H.P., Mackowski, S., Hofmann, E., Hiller, R.G., Bräuchle, C. and Scheer, H. (2008): Relative binding affinities of chlorophylls in peridinin-chlorophyll-protein reconstituted with heterochlorophyllous mixtures, Photosynthesis Research, 95(2-3), 247-52.

25. Mackowski, S., Wörmke, S., Brotosudarmo, T.H.P., Scheer, H. and Bräuchle, C. (2008): Fluorescence spectroscopy of reconstituted peridinin-chlorophyll-protein complexes, Photosynthesis Research, 95(2-3), 253-60.

26. Mackowski, S., Wörmke, S., Brotosudarmo, T.H.P., Jung, C., Hiller, R.G., Scheer, H. and Bräuchle, C. (2007): Energy transfer in reconstituted peridinin-chlorophyll-protein complexes: ensemble and single-molecule spectroscopy studies, Biophysical Journal, 93(9), 3249-58.

27. Wörmke, S., Mackowski, S., Brotosudarmo, T.H.P., Jung, C., Zumbusch, A., Ehrl, M., Scheer, H., Hofmann, E., Hiller, R.G. and Bräuchle, C. (2007): Monitoring fluorescence of individual chromophores in peridinin-chlorophyll-protein complex using single molecule spectroscopy, Biochimica et Biophysica Acta (BBA) – Bioenergetics, 1767, 956-964.

28. Wörmke, S., Makowski, S., Brotosudarmo, T.H.P., Bäuchle, C.H., Gracia, A., Braun, P., Scheer, H. and Hofmann, E. (2007): Detection of Single Biomolecule Fluorescence Excited through Energy Transfer: Application to Light-Harvesting Complexes, Applied Physics Letters, 90, 193901-3.

29. Brotosudarmo, T.H.P., Hofmann, E., Hiller, R.G., Wörmke, S., Mackowski, S., Zumbusch, A., Bräuchle, C. and Scheer, H. (2006): Peridinin-Chlorophyll-Protein Reconstituted with Chlorophyll Mixtures: Preparation, Bulk and Single Molecule Spectroscopy, FEBS Letters, 580, 5257–5262.

C. Publication at conference proceedings with peer review process:

1. Prilianti, K.R., Hariyanto, S., Natali, F.D.D., Indriatmoko, Adhiwibawa, M.A.S., Limantara, L., Brotosudarmo, T.H.P* (2016) Artificial neural network model for photosynthetic pigments identification using multi wavelength chromatographic data, The American Institute of Physics Conference Proceedings, 1723, 030016

2. Adhiwibawa, M.A.S., Setiawan, Y.E., Prilianti, K.R., Brotosudarmo, T.H.P.* (2015) Web camera as low cost multispectral sensor for quantification of chlorophyll in soybean leaves, Proceeding of SPIE9444, doi:10.1117/12.2080951

3. Adhiwibawa, M.A.S., Setiawan, Y.E., Setiawan Y., Prilianti, K.R., Brotosudarmo, T.H.P.* (2015) Application of simple multispectral image sensor and artificial intelligence for predicting of drought tolerant variety of soybean, Procedia Chemistry, 14, 246-255

4. Indriatmoko, Shioi, Y., Brotosudarmo, T.H.P., Limantara, L. (2015) Separation of photosynthetic pigments by high-performance liquid chromatography: comparison of column performance, mobile phase, and temperature, Procedia Chemistry, 14, 202-210

5. Prilianti, K.R., Setiawan, Y., Indriatmoko, Adhiwibawa, M.A.S., Limantara, L., Brotosudarmo, T.H.P. (2014) Probabilistic classification method on multi wavelength chromatographic data for photosynthesis pigments identification, The American Institute of Physics Conference Proceedings, 1587, 78, doi: 10.1063/1.4866538

6. Heriyanto, Michalik, M., Brotosudarmo, T.H.P.*, Limantara, L., Fiedor, L. (2014) Reconstitution approach to tune spectral features of light harvesting complexes for improved light absorption and energy transfer, Energy Procedia, 47, 113-122

7. Brotosudarmo, T.H.P.*, Prihastyanti, M.N.U., Gardiner, A.T., Carey, A.M., Cogdell, R.J. (2014) The light reactions of photosynthesis as a paradigm for solar fuel production, Energy Procedia, 47, 283-289

8. Prihastyanti, M.N.U., Indriatmoko, Brotosudarmo, T.H.P.* (2014) Photostability assay on light-harvesting complex as a material of biophotovoltaic, Energy Procedia, 47, 189-195

9. Luer, L., Moulisova, V., Henry, S., Polli, D., Brotosudarmo, T.H.P., Hoseinkani, S., Brida, D., Lanzani, G., Cerullo, G. and Cogdell, R.J. (2013) Tracing the backward energy transfer from LH1 to LH2 in photosynthetic membranes grown under high and low irradiation, The European Physics Journal Web of Conferences, 41, 08011

D. Patents and Copyrights:

1. Brotosudarmo, T.H.P., Adhiwibawa, M.A.S., Prilianti, K.R., Putra, E.H.E.: Device for Rapid Detection of Pigments Content in Plant Leaf. Submitted as: Indonesia Patent (Application No. P00201600575, application date 06.12.2016)

2. Brotosudarmo, T.H.P., Adhiwibawa, M.A.S., Prilianti, K.R., Putra, E.H.E.: Method in wireless digital image acquisition for prediction of drought tolerant variant of soybean using fuzzy and artificial neural network algorithms. Submitted as: Indonesia Patent (Application No. P00201603069, application date 09.05.2016)

3. Brotosudarmo, T.H.P., Limantara, L., Heriyanto, Indrawati, R., Pratishtisa, T.S.: Method for encapsulation of pro-vitamin A carotenoid in the maltodextrin and tween-80 as the matrixes. Submitted as: Indonesia Patent (Application No. P00201600575, application date 28.01.2016)

4. Brotosudarmo, T.H.P., Adhiwibawa, M.A.S., Prilianti, K.R., Putra, E.H.E. (2015) LCSPM – computer software for quantification of leaf chlorophyll, Indonesia Copyright No. C00201305715

5. Brotosudarmo, T.H.P., Prilianti, K.R., Indriatmoko, Harianto, S. (2014): Sapta Chrom – computer software for identification and verification of photosynthetic pigments using a high-performance liquid chromatography, Indonesia Copyright No. C00201402839

6. Brotosudarmo, T.H.P., Adhiwibawa, M.A.S., Prilianti, K.R. (2013): Mata Daun – mobile application software for measuring chlorophyll and nitrogen content in plant leaves using colour quantification through image digital processing, Indonesia Copyright No. C00201305715

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